On the distribution of transcription times
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Date
2013
Authors
Roussel, Marc R.
Journal Title
Journal ISSN
Volume Title
Publisher
Biomath Forum
Abstract
A previously studied model of prokaryotic transcription [Roussel and Zhu, Bull. Math. Biol. 68 (2006) 1681--1713] is revisited. The first four moments of the distribution of transcription times are obtained analytically and analyzed. A Gaussian is found to be a poor approximation to this distribution for short transcription units at typical values of the rate constants, but a good approximation for long transcription units. An approximate form of the distribution is obtained in which the slow steps are treated exactly and the fast steps are lumped together into a single lag term. This approximate form might be particularly useful as a function to be fit to experimental transcription time distributions. Multi-polymerase effects are also studied by simulation. We find that the analytic model generally predicts the behavior of the multi-polymerase simulations, often quantitatively, provided termination is not rate-limiting.
Description
Open access article. Creative Commons Attribution 3.0 Unported License (CC BY 3.0) applies
Keywords
Gene transcription , Stochastic model
Citation
Roussel, M. R. (2013). On the distribution of transcription times. Biomath, 2(1), 130724, 1-14. http://dx.doi.org/10.11145/150